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Mitochondrial genomes (mitogenomes) have undergone a reduction during their evolution, and the number of genes and tRNAs usually differs greatly between plants and animals. Such differences may be attributed to the effect of phylogenetic constraints. In this study, we performed the first mitogenome-wide survey of the grasses and the legume tribe Fabeae. A total of 26 grass and 12 legume mitogenomes were obtained and their detailed characteristics were analyzed. We also found that the number of genes and tRNAs differs greatly between different families and orders. Moreover, although some of the analyzed genomes exhibit a similar gene order in coding regions, most of them have unique gene orders in non-coding regions. The differences in the gene orders in the non-coding regions of the analyzed mitogenomes may be attributed to the effect of phylogenetic constraints. It was also found that there are some repetitive sequences in the mitogenomes. We identified the sequence of the 49-bp repeats and showed that they are present in many plant mitogenomes and may play an important role in determining the mitogenome size. Our analyses revealed that the size of the mitogenomes and the order of genes and tRNAs differ greatly between the orders and families of grasses and legumes. This information provides further information for understanding the evolution of plant mitogenomes and may aid in resolving phylogenetic relationships between plants, animals, and fungi.Q:
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